AI-Based Image Quality Assessment for MRI and CT Scans in Radiology
Context and Motivation:
Medical imaging plays a critical role in diagnostic workflows, but the diagnostic utility of MRI and CT scans can be significantly degraded by various types of quality issues. These include patient or organ motion artifacts (see, for example, the blurry edges caused by the heartbeat in the figure below), poor contrast, scanner miscalibration, and incorrect scan volume positioning or coverage. Currently, image quality checks are often performed manually by radiologists or technicians, which is time-consuming and subjective or sometimes too late. There is a growing need for robust, automated and instant tools that can perform image quality assessment (IQA) reliably and in real-time to aid clinical decision-making and reduce the need for repeated scans.

Thesis Objective:
The goal of this thesis is to develop a machine learning-based system that automatically assesses the quality of MRI and/or CT scans. The model should detect and categorize common quality issues such as:
- Patient motion artifacts (blurring, ghosting, ringing)
- Scan misalignments (head/body not centered in scan volume)
- Field-of-view clipping or partial coverage of anatomy
- Noise and low signal-to-noise ratio (SNR)
- Beam hardening artifacts (in CT)
- Metal or implant-induced artifacts
- Contrast agent timing issues (e.g., poor vascular contrast)
- Slice thickness inconsistencies or spacing artifacts
- and others
The model should output a quality score and, where possible, localize regions with detected artifacts.
Data:
The Department of Diagnostic, Interventional and Pediatric Radiology (DIPR) will provide a dataset of anonymized MRI and CT scans, along with partial annotations indicating known quality issues. These may include binary or categorical labels per scan, or image-level artifact annotations. Additional manual annotations may be curated as needed for evaluation and training.
Tasks:
- Literature review on existing approaches to medical image quality assessment and artifact classification.
- Data preparation: preprocessing and augmentation, designing train/test splits.
- Model development: investigate and implement CNNs, transformers, or hybrid architectures for volumetric data; evaluate existing pre-trained models.
- Multi-label classification and localization: develop techniques for identifying and attributing multiple artifacts in a single scan.
- Evaluation: using standard metrics (AUC, F1, mean Average Precision), possibly stratified by artifact type.
- User-facing output: produce interpretable visualizations (e.g., saliency maps) to explain detected quality issues.
Requirements:
- Strong background in machine learning and deep learning
- Experience with medical imaging data and 3D image processing is a plus
- Interest in healthcare applications and interdisciplinary collaboration
Deliverables:
- A trained and evaluated AI model for scan quality assessment
- An annotated dataset and data curation tools
- A comprehensive thesis document describing methodology, experiments, and results
- Source code and user documentation
Expected Impact:
This work aims to reduce the burden on radiologists, improve patient throughput, and decrease repeat scan rates by flagging unusable scans early. The project also has potential for real-world deployment in clinical imaging pipelines.
Supervisors
Department of Computer Science (INF)
Prof. Dr. Paolo Favaro, email: paolo.favaro@unibe.ch
Department of Diagnostic, Interventional and Pediatric Radiology (DIPR)
Prof. Dr. med. Hendrik von Tengg-Kobligk, email: Hendrik.vonTengg@insel.ch













